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Journal Club
Topic: The Function of Gut Microbiota
Date: 09/26/2025   Host: Xin Li & Baohua Chen

Presenter: Long Zhou
Reference: Targeting symbionts by apolipoprotein L proteins modulates gut immunity
Nature. doi: 10.1038/s41586-025-08990-4 (2025).
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Presenter: Dan Yu
Reference: Maternal gut microbiota influence stem cell function in offspring
Cell Stem Cell. doi: 10.1016/j.stem.2024.10.003 (2025).
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Topic: Evolution’s Design Wisdom
Date: 09/12/2025   Host: Qiaoling Deng

Presenter: Xinyu Zhang
Reference: Cross-species implementation of an innate courtship behavior by manipulation of the sex-determinant gene
Science. doi: 10.1126/science.adp5831 (2025).
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Presenter: Yiqing Yang
Reference: Does the mantis shrimp pack a phononic shield?
Science. doi: 10.1126/science.adq7100 (2025).
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Topic: Biodiversity under threat: global strategies and molecular insights
Date: 08/29/2025   Host: Sheng Qian

Presenter: Yueyao Hu
Reference: Threat reduction must be coupled with targeted recovery programmes to conserve global bird diversity
Nature Ecology & Evolution. doi: 10.1038/s41559-025-02746-z (2025).
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Presenter: Yuchen Sun
Reference: Transcriptome and Proteome Analyses Reveal Stage-Specific DNA Damage Response in Embryos of Sturgeon (Acipenser ruthenus)
International Journal of Molecular Sciences. doi: 10.3390/ijms23126392 (2024).
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Topic: Neural Circuits of Social Needs
Date: 08/15/2025   Host: Guangji Chen

Presenter: Xiaoxu Xu
Reference: A hypothalamic circuit underlying the dynamic control of social homeostasis
Nature. doi: 10.1038/s41586-025-08617-8 (2025).
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Presenter: Jingrui Lu
Reference: Sexually dimorphic dopaminergic circuits determine sex preference
Science. doi: 10.1126/science.adq7001 (2025).
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Topic: Evolution medicine: from ants to mammals
Date: 08/01/2025   Host: Huimin Cai

Presenter: Fuqiang Lin
Reference: Insulin signaling in the long-lived reproductive caste of ants
Science. doi: 10.1126/science.abm8767 (2022).
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Presenter: Xin Li
Reference: Reactivation of mammalian regeneration by turningon an evolutionarily disabled genetic switch
Science. doi: 10.1126/science.adp0176 (2025).
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Topic: Novel potential factors affecting complex behaviors of animal mating and brooding
Date: 07/18/2025   Host: Anguo Liu

Presenter: Sheng Qian
Reference: Problem-solving males become more attractive to female budgerigars
Science. doi: 10.1126/science.aau8181 (2019).
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Presenter: Qisan Wu
Reference: You eat what you are: personality-dependent filial Cannibalism in a fish with paternal care
Ecology and Evolution. doi: 10.1002/ece3.1966 (2016).
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Topic: Social Influences and Cognitive Mechanisms in Avian Vocal Communication
Date: 07/04/2025   Host: Aoyue Bi

Presenter: Xulan Shen
Reference: Female calls promote song learning in male juvenile zebra finches
Nature communications. doi: 10.1038/s41467-024-53251-z (2024).
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Presenter: Baohua Chen
Reference: Crows ‘count’ the number of self-generated vocalizations
Science. doi: 10.1126/science.adl0984 (2024).
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Topic: The application of Long-Read Sequencing in resolving complex regions and detecting diseases
Date: 06/20/2025   Host: Anguo Liu

Presenter: Quanyu Chen
Reference: Genetic diversity and regulatory features of human-specific NOTCH2NL duplications
BioRxiv. doi: 10.1101/2025.03.14.643395 (2025).
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Reference: Synchronized long-read genome, methylome, epigenome and transcriptome profiling resolve a Mendelian condition
Nature genetics. doi: 10.1038/s41588-024-02067-0 (2025).
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Topic: Applications of Deep Learning in Evolutionary Genomics
Date: 06/06/2025   Host: Yulong Xie

Presenter: Mingyu Suo
Reference: Inferring Historical Introgression with Deep Learning
Systematic Biology. doi: 10.1093/sysbio/syad033 (2023).
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Presenter: Jiaqi Li
Reference: Relating enhancer genetic variation across mammals to complex phenotypes using machine learning
Science. doi: 10.1126/science.abm7993 (2023).
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Topic: Single-cell gene/transcript expression pattern in primate/human brains
Date: 05/23/2025   Host: Guangji Chen

Presenter: Aoyue Bi
Reference: Comparative transcriptomics reveals human-specificcortical features
Science. doi: https://doi.org/10.1126/science.ade9516 (2023).
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Presenter: Anguo Liu
Reference: Single-cell long-read sequencing in human cerebral organoids uncovers cell-type-specific and autism-associated exons
Cell Reports. doi: https://doi.org/10.1016/j.celrep.2023.113335 (2023).
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Topic: The Multicellular Mechanisms in Archaea and the Implications in Cancer
Date: 05/09/2025   Host: Xin Li

Presenter: Yangyi Zhang
Reference: Tissue-like multicellular development triggered by mechanical compression in archaea
Science. doi: https://doi.org/10.1126/science.adu0047 (2025).
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Presenter: Huimin Cai
Reference: Disruption of metazoan gene regulatory networks in cancer alters the balance of co-expression between genes of unicellular and multicellular origins
Genome Biology. doi: https://doi.org/10.1186/s13059-024-03247-1 (2024).
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Topic: New Genes and Functional Innovation
Date: 04/25/2025   Host: Xin Li

Presenter: Guangji Chen
Reference: Functional innovation through new genes as a general evolutionary process
Nature Genetics. doi: https://doi.org/10.1038/s41588-024-02059-0 (2025).
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Presenter: Zijian Huang
Reference: Young duplicate genes show developmental stage- and cell type-specific expression and function in Caenorhabditis elegans
Cell Genomics. doi: https://doi.org/10.1016/j.xgen.2023.100467 (2023).
[PDF] [Slide] [Video]


Topic: The Evolution of The Visual System of Vertebrates
Date: 04/11/2025   Host: Guangji Chen

Presenter: Yulong Xie
Reference: Evolution of neuronal cell classes and types in the vertebrate retina
Nature. doi: https://doi.org/10.1038/s41586-023-06638-9 (2024).
[PDF] [Slide] [Video]

Presenter: Wenjing Wei
Reference: Genomic and phenotypic evidence support visual and olfactory shifts in primate evolution
Nature Ecology & Evolution. doi: https://doi.org/10.1038/s41559-025-02651-5 (2025).
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Topic: Evolution of Networks: From Ecology to Proteins
Date: 03/28/2025   Host: Guangji Chen

Presenter: Jiaqi Xu
Reference: Adaptive rewiring shapes structure and stability in a three-guild herbivore-plant-pollinator network
Communications Biology. doi: https://doi.org/10.1038/s42003-024-05784-8 (2024).
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Presenter: Zhengzhang Zhu
Reference: Evolution of resilience in protein interactomes across the tree of life
PNAS. doi: https://www.pnas.org/doi/10.1073/pnas.1818013116 (2019).
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